Package index • mrIML

All functions

filterRareCommon(): Filter rare response variables from the data

mrBootstrap(): Bootstrap mrIML model predictions

mrCoOccurNet(): Generate a MrIML co-occurrence network

mrCovar(): Investigate partial dependencies of a covariate for mrIML JSDMs (Joint Species Distribution Models)

mrFlashlight(): Convert mrIML object into a flashlight object

mrIML_bird_parasites_LM: An example mrIML model fit to MRFcov::Bird.parasites

mrIML_bird_parasites_RF: An example mrIML model fit to MRFcov::Bird.parasites

mrIMLperformance(): Calculate general performance metrics of a mrIML model

mrIMLpredicts(): Generates a multi-response predictive model

mrInteractions(): Calculate and visualize feature interactions

mrPdPlotBootstrap(): Bootstrap Partial Dependence Plots

mrPerformancePlot(): Plot Model Performance Comparison

mrShapely(): Generate SHAP (SHapley Additive exPlanations) Plots for Multiple Models and Responses

mrVip(): Calculates and helps interpret variable importance for mrIML models.

mrVipPCA(): Principal Component Analysis of mrIML variable importance

readSnpsPed(): Conversion to single column per locus from plink file via LEA functionality

resist_components(): Calculates resistance components from a list of pairwise resistance surfaces